Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015946377.1_cds_XP_016488551.1_79175
CDS Infomation

[gene=LOC107808530] [db_xref=GeneID:107808530] [protein=transcription factor PIF1-like] [protein_id=XP_016488551.1] [location=join(4387..4481,4570..5311,8996..9094,9191..9256,9354..9419,10429..10815,11229..11304,12264..12268)] [gbkey=CDS]
Sequence

ATGAATCACTCTGTTCCTGATTTCGAAATGGATGACGACTACCCGAATATTCCCAAAACT
TCTGGTATCACCACCCCGTCAAAAAAGTCCCCAGTAATGGATGAAGATATAATGGAGCTA
ATATGGCAAAATGGACAAATAATTGCCCAAAGCCAAAATCAAAGATCTCAAACGGTAGCA
GCTTCAGCTCCACCAATATTTATACAAGAGGATGAAATGGCCACGTGGCTTCAGTATCCA
CTTGACGATTCTTCTTTCGAGCGTGATCTCTATGCCAATTTTCTCTATACTACGCCGAGC
TCCTCTATTGTCACCGCCGCCGTGCCGCCGCCGGGAGAGATTGATACTACCACGGCGGAG
ATCCGTCCGAACCAGCCTCCGCCTCAATTGAGATGTACTGAGGGCCAATTTTTACATAGC
TTACAGAATTTCGGGGATTTTTCACGATTGCCTAAAGCAAAATCGCAAAATTATACATCG
AGTTCTGGTAACACAGCTACGGTATCAACGATTGTCGATTCGAATGAAACTCCAATTGCA
GAGTTTTCACGCGTATCGGATAAAGTAGCGCCAGTTTCTGCCGGGAATGACGAAGGAAAG
GCCACGACTGATACTACTACTGCGACGGCGGCGGAAACAACCAGCGGCAGGGAAACGTCG
ACGACGGCATGTGAGTTCACGGGGACGTCATCGGCAAGTGGCTCGAGAGGTAGTGTAAGT
GCCAGTGCGGATCCACCGCCGCTGCAGCCTCCACAGGAGGCGGCGCTTATGCCGGCGGAG
GATCGGAAACGGAAAGGAAGAGAAAGGGGAACGGAGGACAATGAAGAACATAGGGAGGAT
GCTGAATTTGAGTCAGCTGATGTAAAGAAGCAAACCAGCAGTTCTACATCCACAAAGAGA
TCTCGTGCCGCAGAGGTCCATAATCTTTCTGAAAGGAGACGTCGAGATAGAATAAATGAG
AAGATGAAGGCTCTACAAGAACTCATACCGCGGTGCAATAAGTCAGACAAAGCTTCAATG
CTAGATGAAGCGATTGAGTACCTTAAATCATTGCAAATGCAAGTGCAGATGATGTCCATG
GGATGTAGCATGGTCCCTATGATGTATCCTGGAGTCCCGCGATACATGCCAACGATGGGA
ATGGGTATGCGTATGGGGATGGGTACGGGAATGGGCATGAGCCGGCCAATGGTGCCATAT
CCATCTCTAGTTCCAGATCTGGCAATGCAGAATGCAGCTGCAGTAGCACAAATGACTCCT
AGATTTCCTGTTCCAGCATATCATTTGCCGTCAGTTCCTGTACCTGATCCGTCCAGAATC
CGAGCAGCAAACCAGCCAGATCATCCAATGATGAACTCACTTGTTGGACATAACACTAAT
CAGCCCAGACTTCCAAATCTTAGTGATCCATATCAACAATATTATGCTCTACACCAGGCA
CAAGTGTTACCACAGAATCAGCGAGCGGAACAGCCAAGCAGCAGTAACCCAAGCAGCCGC
ATAGAAGAAAGTCCAGCAAATCATCAAACTGGTTGA

Peptide Sequence

PEP ID

XP_016488551.1
PEP Infomation

PREDICTED: transcription factor PIF1-like [Nicotiana tabacum]
Sequence

MNHSVPDFEMDDDYPNIPKTSGITTPSKKSPVMDEDIMELIWQNGQIIAQSQNQRSQTVA
ASAPPIFIQEDEMATWLQYPLDDSSFERDLYANFLYTTPSSSIVTAAVPPPGEIDTTTAE
IRPNQPPPQLRCTEGQFLHSLQNFGDFSRLPKAKSQNYTSSSGNTATVSTIVDSNETPIA
EFSRVSDKVAPVSAGNDEGKATTDTTTATAAETTSGRETSTTACEFTGTSSASGSRGSVS
ASADPPPLQPPQEAALMPAEDRKRKGRERGTEDNEEHREDAEFESADVKKQTSSSTSTKR
SRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQMQVQMMSM
GCSMVPMMYPGVPRYMPTMGMGMRMGMGTGMGMSRPMVPYPSLVPDLAMQNAAAVAQMTP
RFPVPAYHLPSVPVPDPSRIRAANQPDHPMMNSLVGHNTNQPRLPNLSDPYQQYYALHQA
QVLPQNQRAEQPSSSNPSSRIEESPANHQTG

Transcript Sequence

Gene sequence data has not been registered.